Department of Biological Sciences
Indian Institute of Science Education and Research Bhopal

SNo Authors Title of Article Journal Year
1 Vineet Kumar Sharma Kundan Kumar Shubham Jaiswal Gaurao Dhoke Ashok Sharma Mechanistic and structural insight into promiscuity based metabolism of cardiac drug digoxin by gut microbial enzyme JOURNAL OF CELLULAR BIOCHEMISTRY 2018
2 Sourav Datta Katharina Bursch Premachandran Yadukrishnan Nikhil Job Henrik Johansson Two B-box proteins regulate photomorphogenesis by oppositely modulating HY5 through their diverse C-terminal domains Plant Physiology 2018
3 Pullikan Joby Abhijit Maji Darshan Dhakan Tony Grace Gut Microbial Dysbiosis in Indian Children with Autism Spectrum Disorders Microbial Ecology 2018
4 Ajith Ashokan Vinita Gowda Describing terminologies and discussing records: More discoveries of vivipary in the genus Hedychium J. Koenig (Zingiberaceae) from Northeast India Phytokeys 2018
5 Premachandran Yadukrishnan Nikhil Job Henrik Johansson Sourav Datta Opposite Roles of Group IV BBX Proteins: Exploring Missing Links between Structural and Functional Diversity Plant Signaling & Behavior 2018
6 Ruchika Mishra Zeeshan Mushtaq Ramprasad Regar Bhagaban Mallik Vimlesh Kumar Jeyaraman Sankar Selective Imaging of Lipids in Adipocytes Using an Imidazolyl Derivative of Perylenebisimide ChemBioChem 2018
7 Ajit Chande Subhrashis Banerjee Vipin Bhardwaj Popat Shinde Pradip Bagle Amol Gade Nitin Patil Catalytic Enantioselective 1, 3‐Alkyl Shift in Alkyl Aryl Ethers: Efficient Synthesis of Optically Active 3, 3′‐Diaryloxindoles Angewandte Chemie International Edition 2018
8 Deepti Chaturvedi Radhakrishnan Mahalakshmi Folding determinants of transmembrane β-barrels using engineered OMP chimeras Biochemistry 2018
9 Muralikrishna Lella Radhakrishnan Mahalakshmi Direct Structural Annotation of Membrane Protein Aggregation Loci using Peptide–Based Reverse–Mapping J. Phys. Chem. Lett. 2018
10 Chitra Shanbhag Gregor P. Jose Rahul Nisal Jeet Kalia Rapid and reversible hydrazone bioconjugation in cells without the use of extraneous catalysts. Organic & Biomolecular Chemistry 2018
11 Nagarjun Vijay Ajit Chande A hypothetical new role for single-stranded DNA binding proteins in the immune system Immunobiology 2018
12 Nagarjun Vijay Population genomic analysis reveals contrasting demographic changes of two closely related dolphin species in the last glacial. Molecular Biology and Evolution 2018
13 Nagarjun Vijay Ajit Chande A hypothetical new role for single-stranded DNA binding proteins in the immune system Immunobiology 2018
14 Gajendra Kumar Azad Modifying Chromatin by Histone Tail Clipping Journal of Molecular Biology 2018
15 Sanjeev Shukla Atul Samaiya Rajendra Kumar Panday Smriti Singh Athira Ajith Amit Gupta PAK2–c-Myc–PKM2 axis plays an essential role in head and neck oncogenesis via regulating Warburg effect Cell Death and Disease 2018
16 Debayan Sarkar Yashaswi Singh Jeet Kalia Protein–lipid interfaces can drive the functions of membrane-embedded protein–protein complexes ACS Chemical Biology 2018
17 Abhishek Anil Dubey Saloni Rajesh Wani Vikas Jain Methylotrophy in mycobacteria: Dissection of the methanol metabolism pathway in Mycobacterium smegmatis Journal of Bacteriology 2018
18 Radhakrishnan Mahalakshmi Deepti Chaturvedi Position–specific contribution of interface tryptophans on membrane protein energetics Biochim. Biophys. Acta (Biomembranes) 2018
19 Radhakrishnan Mahalakshmi Muralikrishna Lella Solvation Driven Conformational Transitions in the Second Transmembrane Domain of Mycobacteriophage Holin. Biopolymers 2017
20 Ankit Gupta Bharat Ramasubramanian Iyer Radhakrishnan Mahalakshmi Approaches for preparation and biophysical characterization of transmembrane β-barrels Springer Protocols Handbooks 2017
21 Ashok K. Sharma Gopal Srivastava ToxiM: A Toxicity Prediction Tool for Small Molecules Developed Using Machine Learning and Chemoinformatics Approaches Frontiers in Pharmacology 2017
22 Abhijit Maji Richa Misra Darshan Dhakan Vineet K Sharma Rup Lal Yogendra Singh Gut microbiome contributes to impairment of immunity in pulmonary tuberculosis patients by alteration of butyrate and propionate producers Environmental Microbiology 2017
23 Muralikrishna Lella Radhakrishnan Mahalakshmi Metamorphic Proteins: Emergence of dual protein folds from one primary sequence. Biochemistry 2017
24 Bharat Iyer Punit Zadafiya Pallavi Vetal Radhakrishnan Mahalakshmi Energetics of side chain partitioning of β-signal residues in unassisted folding of a transmembrane β-barrel protein. Journal of Biological Chemistry 2017
25 Bylapudi Ganesh Manika Indrajit Singh Vikas Jain On the domains of T4 phage sliding clamp gp45: an intermolecular crosstalk governs structural stability and biological activity. BBA-General Subjects 2017
26 Ajith Ashokan Vinita Gowda Diversity of the genus Hedychium J. Koenig (Zingiberaceae) in the Northeast of India-I. Heliconia Society International Bulletin. 2017
27 Amit K Verma Danish Diwan Sandeep Raut Neha Dobriyal Rebecca E Brown Vinita Gowda Justin K Hines Chandan Sahi Evolutionary Conservation and Emerging Functional Diversity of the Cytosolic Hsp70:J Protein Chaperone Network of Arabidopsis thaliana. G3: Genes Genomes Genetics 2017
28 Kuldeep Verma sunando datta Heavy subunit of cell surface Gal/GalNAc lectin (Hgl) undergoes degradation via endo-lysosomal compartments in Entamoeba histolytica. Small GTPases 2017
29 Jerome Gilleron sandra Lacas-Jarvais Sameena Parveen Jini Sugatha Amulya Priya Sunando Datta Essential and selective role of SNX12 in transport of endocytic and retrograde cargo Journal of Cell Science 2017
30 Kuldeep Verma The monomeric GTPase Rab35 regulates phagocytic cup formation and phagosomal maturation in Entamoeba histolytica Journal of Biological Chemistry 2017
31 Himanshu Kumar Adrian Bot Role of immune cells, immune modulating factors and immunotoxins in cancer immunotherapy International Reviews in Immunology 2017
32 Himanshu Kumar Adrian Bot Role of MicroRNAs in shaping innate immunity and as therapeutic targets for autoimmune diseases International Reviews in Immunology 2017
33 Sathiya Pandi Narayanan Smriti Singh Sanjeev Shukla A saga of cancer epigenetics: linking epigenetics to alternative splicing Biochemical J 2017
34 Palash Sarkar Shashank Singh A simple method for obtaining relations among factor basis elements for special hyperelliptic curves Applicable Algebra in Engineering, Communication and Computing 2017
35 Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya Bhawna Burdak Parini Surti Manoj S Patel Vikas Jain Structural plasticity of T4 transcription co-activator gp33 revealed by a protease-resistant unfolded state Biophysical and Biochemical Research Communication 2017
36 Neha Dobriyal Prerna Tripathi Susrita Sarkar Yogesh Tak Amit K Verma Chandan Sahi Partial dispensability of Djp1's J domain in peroxisomal protein import in Saccharomyces cerevisiae results from genetic redundancy with another class II J protein, Caj1 Cell Stress and Chaperones 2017
37 Radhakrishnan Mahalakshmi Svetlana Maurya Mitochondrial VDAC2 and cell homeostasis: highlighting hidden structural features and unique functionalities. Biological Reviews 2017
38 Ram Kumar Mishra Mansi Gujrati Vaibhav Kumar Shukla Jai Shankar Singh Ashutosh Kumar Backbone and side-chain resonance assignments of Plasmodium falciparum SUMO Biomolecular NMR assignments 2017
39 Bhagaban Mallik Vimlesh Kumar Regulation of actin-Spectrin Cytoskeleton by ICA69 at the Drosophila Neuromuscular Junction Communicative and Integrative Biology 2017
40 Rupali Yadav Vijay Sherivastava Watanabe Natsuki Priya Tomar Madhumita Mukherjee samudrala Gourinath Kumiko Nakada-Tsukai Tomoyoshi Nozaki Sunando Datta Structural and thermodynamic characterization of metal binding in Vps29 from Entamoeba histolytica: Implication in retromer function. Molecular Microbiology 2017
41 Ajit Chande Claudia Firrito Massimo Pizzato SERINC5: not all splice variants work against HIV Journal of Public Health and Emergency 2017
42 Atul Samaiya Rajendra Kumar Panday Sandhya Yadav Neha Ahuja Amit Gupta Kajal Biswas Sathiya Pandi Narayanan Smriti Singh Shyam K Sharan Sanjeev Shukla Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect Proceedings of the National Academy of Sciences 2017
43 Himanshu Kumar Adrian Bot Innate immunity and infectious diseases–An update International Reviews in Immunology 2017
44 Himanshu Kumar Adrian Bot Antibodies in pathogenesis and management of diseases International Reviews in Immunology 2017
45 Soumya Kamilla Vikas Jain Robust high throughput real-time monitoring assay for the specific screening of bacterial cell envelope inhibitors Proc. Indian Natn. Sci. Acad. 2017
46 Himanshu Joshi Vikas Jain Novel method to rapidly and efficiently lyse Escherichia coli for the isolation of recombinant protein Analytical Biochemistry 2017
47 Manika Indrajit Singh Vikas Jain Identification and characterization of an inside-out folding intermediate of T4 phage sliding clamp Biophysical Journal 2017
48 Amit K Verma Evolutionary Conservation and Emerging Functional Diversity of the Cytosolic Hsp70:J Protein Chaperone Network of Arabidopsis thaliana. G3: Genes Genomes Genetics 2017
49 Bhagban Mallik Sandeep Raut Arpan Parichha Chandan Sahi Vimlesh Kumar RNAi-Mediated Reverse Genetic Screen Identified Drosophila Chaperones Regulating Eye and Neuromuscular Junction Morphology. G3: Genes Genomes Genetics 2017
50 vineet k sharma sudheer gupta ashok sharma vibhuti shastri midhun madhu Prediction of Anti-inflammatory proteins/peptides: an insilico approach. Journal of Translational Medicine 2017
51 vineet k sharma shubham jaiswal rituja saxena Draft Genome Sequence of Pseudomonas hussainii Strain MB3, a Denitrifying Aerobic Bacterium Isolated from the Rhizopheric Region of Mangrove Trees in the Andaman Islands, India. Genome Announcements 2017
52 vineet k sharma parul mittal rituja saxena Draft Genome Sequence of Anoxybacillus mongoliensis Strain MB4, a Sulfur-Utilizing Aerobic Thermophile Isolated from a Hot Spring in Tattapani, Central India. Genome Announcements 2017
53 Nikhil Chaudhary Ankit Gupta vineet k sharma BioFuelDB: a database and prediction server of enzymes involved in biofuels production. Journal of Biomolecular Structure and Dynamics 2017
54 vineet k sharma ashok sharma nikhil chaudhary Shubham jaiswal .A novel approach for the prediction of species-specific biotransformation of xenobiotic/drug molecules by human gut microbiota. Scientific Reports 2017
55 vineet k sharma sudheer gupta parul mittal midhun k madhu IL17eScan: a tool for the identification of peptides inducing IL-17 response. Frontiers in Immunology 2017
56 Himanshu Joshi Surya P Seniya Venkatesan Suryanarayanan Neelam D Patidar Sanjeev K Singh Vikas Jain Dissecting the structure–function relationship in lysozyme domain of mycobacteriophage D29-encoded peptidoglycan hydrolase FEBS Lett. 2017
57 Pilendra Singh Tomar Bahadur Kumar Thakre Biological Sciences SK Raghuvir Patra A Pyridoindole-Based Multifunctional Bioprobe: pH-Induced Fluorescence Switching and Specific Targeting of Lipid Droplets Chemistry -Asian Journal 2017
58 Upendarrao Golla Swati Swagatika Sakshi Chauhan Raghuvir S Tomar A systematic assessment of chemical, genetic, and epigenetic factors influencing the activity of anticancer drug KP1019 (FFC14A) Oncotarget 2017
59 Puja Kumari Himanshu Kumar Viral Deubiquitinases: Role in Evasion of Anti-viral Innate Immunity Critical Reviews in Microbiology 2017
60 Shalabh Mishra Himanshu Kumar Balancing Anti-viral innate immunity and immune homeostasis Cellular & molecular Immunology 2017
61 Puja Kumari Irene Saha Athira Narayanan Sathish Narayanan Akinori Takaoka Nachimuthu Senthil Kumar Prafullakumar Tailor Himanshu Kumar Essential role of HCMV deubiquitinase in promoting oncogenesis by targeting anti-viral innate immune signaling pathways Cell Death and Disease 2017
62 Bhagaban Mallik Manish Kumar Dwivedi Zeeshan Mushtaq Manisha Kumari Praveen Kumar Verma Vimlesh Kumar Regulation of Neuromuscular Junction Organization by Rab2 and its Effector ICA69 in Drosophila Development 2017
63 Saumitra Dey Choudhury Altered Translational Repression of an RNA-binding Protein, elav by AOA2-causative Senataxin Mutation Synapse 2017
64 Sandeep Raut Bhagaban Mallik Arpan Parichha Amrutha V Chandan Sahi Vimlesh Kumar RNAi-mediated Reverse Genetic Screen Identified Drosophila Chaperones Regulating Eye and Neuromuscular Junction Morphology G3: Genes Genomes Genetics 2017
65 Radhakrishnan Mahalakshmi Svetlana Maurya Bhavna Burdak Parini Surti Manoj Patel Vikas Jain Structural plasticity of T4 transcription co-activator gp33 revealed by a protease-resistant unfolded state Biophysical and Biochemical Research Communication 2017
66 Deepti Chaturvedi Radhakrishnan Mahalakshmi Transmembrane β-barrels: Evolution, folding and energetics. Biochim. Biophys. Acta (Biomembranes) 2017
67 Muralikrishna Lella Radhakrishnan Mahalakshmi Engineering a Transmembrane Nanopore Ion Channel from a Membrane Breaker Peptide. The Journal of Physical Chemistry Letters 2016
68 Saumitra Dey Choudhury Zeeshan Mushtaq Suneel Reddi-Alla Sruthi S Balakrishnan Rajan S Thakur KS Krishnan Padinjat Raghu Mani Ramaswami Vimlesh Kumar sigma2-adaptin Facilitates Basal Synaptic Transmission and is required for Regenerating Endo- Exo Cycling Pool under High Frequency Nerve Stimulation in Drosophila GENETICS 2016
69 Zeeshan Mushtaq Saumitra Dey Choudhury Sri Krishna Gangwar Genny Orso Vimlesh Kumar Human Senataxin Modulates Structural Plasticity of the Neuromuscular Junction in Drosophila through a Neuronally Conserved TGFβ Signalling Pathway Neurodegenerative Diseases 2016
70 Madhumita Mukherjee MIntu Chandra Kuldeep Verma Rupali Yadav Sunando Datta Biophysical studies on calcium and carbohydrate binding to carbohydrate recognition domain of Gal/GalNAc lectin from Entamoeba histolytica: insights into host cell adhesion. J. Biochemistry 2016
71 Sudheer Gupta Midhun K. Madhu Ashok K. Sharma Vineet K. Sharma ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins Journal of Translational Medicine 2016
72 Vineet K. Sharma Darshan Dhakan Harish K. Sanjiv Kumar Ashok K. Sharma Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins BMC Genomics 2016
73 Vineet K. Sharma Ashok K. Sharma Harish K. Vishnu P.K. Prasoodanan Sanjiv Kumar Ankit Gupta Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes Frontiers in Microbiology 2016
74 Vineet K. Sharma Nikhil Chaudhary Rituja Saxena Darshan Dhakan Draft Genome Sequence of Tepidimonas taiwanensis Strain MB2, a Chemolithotrophic Thermophile Isolated from a Hot Spring in Central India American Society of Microbiology All-Inclusive Package 2016
75 S. D. Das Kusum Dhochak Vikram Tripathi Kondo route to spin inhomogeneities in the honeycomb Kitaev model Physical Review B 2016
76 Rituja Saxena Vineet K. Sharma A Metagenomic Insight Into the Human Microbiome: Its Implications in Health and Disease Medical and Health Genomics 2016
77 Tomoyoshi Nozaki Yumiko Saito-Nakano Mintu Chandra Vijay Srivastava Sunando Datta Crystal Structure Analysis of Wild Type and Fast Hydrolyzing Mutant of EhRabX3, a Tandem Ras Superfamily GTPase from Entamoeba histolytica Journal of Molecular Biology 2016
78 Sakshi Chauhan Mandal Papita Raghuvir Singh T The biochemical analysis reveals multifactorial mechanism of histone H3 clipping by Chicken Liver Histone H3 protease Biochemistry 2016
79 Manika Indrajit Singh Abhishek Anil Dubey Vikas Jain Rapid and robust PCR-based all-recombinant cloning methodology PLoS One 2016
80 Gajendra Azad Partial purification of histone H3 proteolytic activity from budding yeast Saccharomyces cerevisiae Yeast 2016
81 Muralikrishna Lella Soumya Kamilla Vikas Jain Radhakrishnan Mahalakshmi Molecular mechanism of holin transmembrane domain I in pore formation and bacterial cell death ACS Chemical Biology 2016
82 Sakshi Chauhan Efficient expression and purification of biologically active human cystatin proteins Protein Expression and Purification 2016
83 Sunando Datta Tomo Nozaki Kuldeep Verma Role of EhRab7A in phagocytosis of type 1 fimbriated E. coli by Entamoeba histolytica. Molecular Microbiology 2016
84 Mintu Chandra Sunando Datta Role of cysteine residues in the redox-regulated oligomerization and nucleotide binding to EhRabX3. Molecular and Biochemical Parasitology 2016
85 Santhosh Kumar Sariki Pushpendra Kumar Sahu Upendarao Golla Gajendra Kumar Azad Vikash Raghuvir Singh T Sen1, the homolog of human Senataxin, is critical for survival through regulation of cellular redox homeostasis, mitochondrial function and TOR in Saccharomyces cerevisiae FEBS Journal 2016
86 Upendarrao Golla Deepthi Joseph Raghvir Singh Tomar Combined Transcriptomics and Chemical-Genetics Reveal Molecular Mode of Action of Valproic acid, an Anticancer Molecule using Budding Yeast Model Scientific Reports 2016
87 Mintu Chandra Runjhun Saran Sunando Datta Deciphering the role of Atg5 in nucleotide dependent interaction of Rab33B with the dimeric complex, Atg5-Atg16L1. Chandra M, Saran R, Datta S. Biophysical and Biochemical Research Communication 2016
88 Nazmul Haque Sanjeev Shukla Kyster K Nanan Maria F Prigge Garima Verma Morgan Thenoz Marc A Bailly David Sturgill Ryan J Marina Shalini Oberdoerffer TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing EMBO J 2016
89 Svetlana Maurya Radhakrishnan Mahalakshmi Control of human VDAC-2 scaffold dynamics by interfacial tryptophans is position specific. Biochim. Biophys. Acta (Biomembranes) 2016
90 Priya Vijayakumar Sourav Datta Liam Dolan RSL4 promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth. New Phytologist 2016
91 Mohan Reddy Bodireddy Ranjeet Singh Mahla P Md Khaja Mohinuddin G Trivikram Reddy D Vijaya Raghav Prasad Himanshu Kumar Discovery of a new class of 16-membered (2Z, 11Z)-3, 11-di (aryl/naphthyl)-1, 13-dioxa-5, 9-dithia-2, 12-diazacyclohexadeca-2, 11-dienes as anti-tumor agents RSC Advances 2016
92 Diwakar D Kulkarni Himanshu Kumar Pradip N Gandhale Periyasamy Vijakumar Anamika Mishra Pradip B Ranaware Ashwin Ashok Raut Genome Wide Host Gene Expression Analysis in Chicken Lungs Infected with Avian Influenza Viruses PLoS One 2016
93 Mohammed Fawaz Periyasamy Vijaykumar Anamika Mishra Pradip N Gandhale Rupam Dutta Nitin M Kamble Shashi B Sudhakar Parimal Roychoudhary Himanshu Kumar Diwakar D Kulkarni Ashwin Ashok Raut Duck gut viral metagenome analysis captures snapshot of viral diversity. BMC Genomics 2016
94 Vineet K Sharma Prediction of Biofilm Inhibiting Peptides: An In Silico Approach. Frontiers in Microbiology 2016
95 Munazza T Fatima Abhishek Chanchal Prabhu S Yavvari Somnath D Bhagat Mansi Gujrati Ram Kumar Mishra Aasheesh Srivastava Cell Permeating Nano-Complexes of Amphiphilic Polyelectrolytes Enhance Solubility, Stability, and Anti-Cancer Efficacy of Curcumin Biomacromolecules 2016
96 vineet k sharma Sudheer Gupta Ashok Sharma Shubham jaiswal Prediction of Biofilm Inhibiting Peptides: An In Silico Approach. Frontiers in Microbiology 2016
97 vineet k sharma rituja saxena darshan dhakan parul mittal Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments. Frontiers in Microbiology 2016
98 Chetana Ajit Tamadaddi Chandan Sahi J domain independent functions of J proteins Cell Stress and Chaperones 2016
99 Gajendra Kumar Azad Raghuvir Singh Tomar The multifunctional transcription factor Rap1: a regulator of yeast physiology Frontiers Bioscience 2016
100 Upendarrao Golla Amit Adhikary Amit Kumar Mondal Raghuvir Singh Tomar Sanjit Konar Synthesis, structure, magnetic and biological activity studies of bis-hydrazone derived Cu(II) and Co(II) coordination compounds Dalton Transactions 2016
101 Manika Indrajit Singh Vikas Jain Molecular dissection of the homotrimeric sliding clamp of T4 phage: Two domains of a subunit display asymmetric characteristics Biochemistry 2016
102 Soumya Kamilla Vikas Jain Mycobacteriophage D29 holin C-terminal region functionally assists in holin aggregation and bacterial cell death FEBS Journal 2016
103 Angela Anna Messina Matteo Ceccarelli Salvatore Foti Andrea Magrì Mariano Andrea Scorciapino Francesca Guarino Carlo Guardiani Deepti Chaturvedi Ankit Gupta Rosaria Saletti Vanessa Checchetto Simona Reina Radhakrishnan Mahalakshmi Ildiko Szabo Vito De Pinto VDAC3 as a sensor of oxidative state of the intermembrane space of mitochondria: the putative role of cysteine residue modifications. Oncotarget 2016
104 Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya VDAC-2: Mitochondrial outer membrane regulator masquerading as a channel? FEBS Journal 2016
105 Vikas Jain Soumya Kamilla Muralikrishna Lella Radhakrishnan Mahalakshmi Molecular Mechanism of Holin Transmembrane Domain I in Pore Formation and Bacterial Cell Death. ACS Chemical Biology 2016
106 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana Stereopositional Outcome in the Packing of Dissimilar Aromatics in Designed beta-Hairpins Chemistry - A European Journal 2016
107 Angela A. Messina Matteo Ceccarelli Salvatore Foti Andrea Magrì Mariano Andrea Scorciapino Francesca Guarino Carlo Guardiani Deepti Chaturvedi Ankit Gupta Rosaria Saletti Vanessa Checchetto Simona Reina Radhakrishnan Mahalakshmi Ildiko Szabo Vito De Pinto Unexpected Modifications of Cysteines in VDAC3: Indication that VDAC3 may Signal the Mitochondrial Intermembrane Redox State Biophysical Journal 2016
108 Radhakrishnan Mahalakshmi Angela Messina Ankit Gupta Simona Reina Vito De Pinto Role of cysteines in mammalian VDAC isoforms' function. Biochim. Biophys. Acta (Bioenergetics) 2016
109 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana Capping beta-Hairpin with N-terminal D-Amino Acid Stabilizes Peptide Scaffold. Biopolymers 2016
110 Gajendra Kumar Azad Vikash Singh Shivani Barnawal Mayur J Thakare Raghuvir Singh Tomar The transcription factor Rap1p is required for tolerance to cell wall-perturbing agents and for cell wall maintenance in Saccharomyces cerevisiae FEBS Lett. 2015
111 Vikash Singh Gajendra Kumar Azad Santhosh Kumar Sariki Raghuvir Singh Tomar Flocculation in Saccharomyces cerevisiae is regulated by RNA/DNA helicase Sen1p FEBS Lett. 2015
112 Upendarrao Golla Bandi Goutham Raghuvir Singh Tomar Molecular Cytotoxicity Mechanisms of the Herbicide Allyl Alcohol (Acrolein) in Budding Yeast Chemical Research in Toxicology 2015
113 Amol Arunrao Pohane Vikas Jain Insights into the regulation of bacteriophage endolysin: Multiple means to the same end Microbiology 2015
114 Vineet K. Sharma Darshan Dhakan Nikhil Chaudhary Rituja Saxena Draft Genome Sequence of Gulbenkiania mobilis Strain MB1, a Sulfur-Metabolizing Thermophile Isolated from a Hot Spring in Central India Genome Announcements 2015
115 Ashok K. Sharma Ankit Gupta Sanjiv Kumar Darshan Dhakan Vineet K. Sharma Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences Genomics 2015
116 Ankit Gupta Vineet K. Sharma Using the taxon-specific genes for the taxonomic classification of bacterial genomes BMC Genomics 2015
117 Nikhil Chaudhary Ashok K. Sharma Piyush Agarwal Ankit Gupta Vineet K. Sharma 16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets PLoS One 2015
118 Merlyn Emmanuel Yumiko Saito-Nakano Tomoyoshi Nozaki Sunando Datta Small GTPase Rab21 mediates fibronectin induced actin reorganization in Entamoeba histolytica: implications in pathogen invasion. PLOS Pathogen 2015
119 Amol Arunrao Pohane Neelam Devidas Patidar Vikas Jain Modulation of domain-domain interaction and protein's function by a charged linker: A case study of mycobacteriophage D29 endolysin. FEBS Lett. 2015
120 Aashish Sharma Amol Arunrao Pohane Sandhya Bansal Avinash Bajaj Vikas Jain Aasheesh Srivastava Cell Penetrating Synthetic Antimicrobial Peptides (SAMPs) Exhibiting Potent and Selective Killing of Mycobacterium by Targeting Its DNA Chemistry - A European Journal 2015
121 David Lambright Yannis Kalaidzidis Amulya Priya Inna Kalaidzidis Sunando Datta Molecular insights into Rab7-mediated endosomal recruitment of core retromer: deciphering the role of Vps26 and Vps35. Traffic 2015
122 Kuldeep Verma Insights into endosomal maturation of human holo-transferrin in the enteric parasite Entamoeba histolytica: essential roles of Rab7A and Rab5 in biogenesis of giant early endocytic vacuoles. Cellular Microbiology 2015
123 Sathiya Pandi Narayanan Smriti Singh Amit Gupta Sandhya Yadav Shree Ram Singh Sanjeev Shukla Integrated genomic analyses identify KDM1A’s role in cell proliferation via modulating E2F signaling activity and associate with poor clinical outcome in oral cancer Cancer Letters 2015
124 Puja Kumari Sathish Narayanan Himanshu Kumar Herpesviruses: interfering innate immunity by targeting viral sensing and interferon pathways Reviews in Medical Virology 2015
125 Himanshu Kumar Ashwin Ashok Raut Akinori Takaoka Shizuo Akira Taro Kawai Ashish Kumar Ranjeet Singh Mahla Shalabh Mishra Harshad Ingle Sushil Kumar IPS-1 differentially induces TRAIL, BCL2, BIRC3 and PRKCE in type I interferons-dependnt and independent anticancer activity Cell Death and Disease 2015
126 Anamika MIshra Ashwin Ashok Raut Sushil Kumar Harshad Ingle Diwakar Dattatraya Kulkarni Takeshi Kameyama Akinori Takaoka Shizuo Akira Himanshu Kumar The microRNA miR-485 targets host and influenza virus transcripts to regulate antiviral immunity and restrict viral replication Science Signaling 2015
127 Liam Dolan Helen Prescott Sourav Datta Intensity of a pulse of RSL4 transcription factor synthesis determines Arabidopsis root hair cell size. Nature Plants 2015
128 Kirtimaan Syal Himanshu Joshi Dipankar Chatterji Vikas Jain Novel pppGpp binding site at the C-terminal region of Rel enzyme from Mycobacterium smegmatis FEBS Journal 2015
129 Svetlana Rajkumar Maurya Deepti Chaturvedi Bharat Ramasubramanian Iyer Ankit Gupta Radhakrishnan Mahalakshmi Thermodynamic, structural and functional properties of membrane protein inclusion bodies are analogous to purified counterparts: Case study from bacteria and humans. RSC Advances 2015
130 Kamlesh Makwana Radhakrishnan Mahalakshmi Nature of aryl-tyrosine interactions contribute to beta-hairpin scaffold stability: NMR evidence for alternate ring geometry. Phys. Chem. Chem. Phys. 2015
131 Radhakrishnan Mahalakshmi Folding and stability of transmembrane beta-barrels of bacterial and human origin: Probing underlying similarities and principal differences using in vitro systems. Proc. Indian Natn. Sci. Acad. 2015
132 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana NMR Analysis of Tuning Cross-Strand Phe/Tyr/Trp - Trp Interactions in Designed beta-Hairpin Peptides: Terminal Switch from L- to D-Amino Acid as a Strategy for beta-Hairpin Capping. J. Phys. Chem. B 2015
133 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana Trp-Trp Cross-Linking: A Structure-Reactivity Relationship in the Formation and Design of Hyperstable Peptide beta-Hairpin and alpha-Helix Scaffolds. Organic Letters 2015
134 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana Structure Stabilizing Role of Aromatic Interactions is Decided by Spatial Arrangement of Aromatic Pairs: A Case Study With Designed Peptide beta-Hairpins. Peptides 2015
135 Bharat Ramasubramanian Iyer Radhakrishnan Mahalakshmi Residue-dependent thermodynamic cost and barrel plasticity balances activity in the PhoPQ-activated enzyme PagP of Salmonella typhimurium Biochemistry 2015
136 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana Implications of Aromatic-Aromatic Interactions: From Protein Structures to Peptide Models. Protein Science 2015
137 Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya N-helix and cysteines inter-regulate human mitochondrial VDAC-2 function and biochemistry. Journal of Biological Chemistry 2015
138 Gajendra Kumar Azad Vikash Singh Raghuvir Singh Tomar Assessment of the biological pathways targeted by isocyanate using N-succinimidyl N-methylcarbamate on budding yeast Saccharomyces cerevisiae. PLoS One 2014
139 Shivani Baranwal Amrendar M Reddy Papita Mandal Gajendra Kumar Azad Vikash Singh Raghuvir Singh Tomar Anti-cancer drug KP1019 induces Hog1 phosphorylation and protein ubiquitination in Saccharomyces cerevisiae Eur J. Pharmacology 2014
140 Vikash Singh Gajendra Kumar Azad Papita Mandal Amrendar M Reddy Raghuvir Singh Tomar Anti-cancer drug KP1019 modulates epigenetics and induces DNA damage response in Saccharomyces cerevisiae FEBS Lett. 2014
141 Shivani Barnawal Gajendra Kumar Azad Vikash Singh Raghuvir Singh Tomar Signaling of chloroquine-induced stress in the yeast Saccharomyces cerevisiae requires the Hog1 and Slt2 MAPK Pathways Antimicrobial Agents and Chemotherapy 2014
142 Papita Mandal Sakshi Chauhan Raghuvir Tomar H3 clipping activity of glutamate dehydrogenase is regulated by stefin B and chromatin structure FEBS Journal 2014
143 Gajendra Kumar Azad Vikash Singh Mayur J Thakare Shivani Barnawal Raghuvir Singh Tomar Mitogen-activated protein kinase Hog1 is activated in response to curcumin exposure in the budding yeast Saccharomyces cerevisiae BMC Microbiology 2014
144 Gajendra Kumar Azad Vikash Singh Papita Mandal Prabhat Singh Upendarrao Golla Sakshi Chauhan Shivani Barnawal Raghuvir Singh Tomar Ebselen induces reactive oxygen species (ROS)-mediated cytotoxicity in Saccharomyces cerevisiae with inhibition of glutamate dehydrogenase being a target FEBS Open Biol 2014
145 Sanjit Konar Soumyabrata Goswami Qysar Maqbool Aasheesh Srivastava Transparent, free-standing, flexible and selective CO 2 adsorbent films fabricated from homopolymer/metal salt hybrid gels Journal of Materials Chemistry A, B and C 2014
146 Amarendar Reddy M Aasheesh Srivastava Mechano-responsive gelation of water by a short alanine-derivative Soft Matter 2014
147 Ankit Gupta Rohan Kapil Darshan Dhakan Vineet K. Sharma MP3: A Software Tool for the Prediction of Pathogenic Proteins in Genomic and Metagenomic Data PLoS One 2014
148 Vineet K. Sharma Members of International Glossina Genome Initiative Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis Science 2014
149 Sunando Datta Mintu Chandra Vijay Srivastava Crystallization and preliminary X-ray analysis of RabX3, a tandem GTPase from Entamoeba histolytica Acta Crystallographica section F 2014
150 Srinivas Samala Pragyan Pallavi Ravi Kumar Rajesh K Arigela Gajendra Singh Ravi Sankar Ampapathi Amulya Priya Sunando Datta Abhijit Patra Bijoy Kundu One-Pot Synthesis of Highly Fluorescent Pyrido[1,2-a]indole Derivatives through CH/NH Activation: Photophysical Investigations and Application in Cell Imaging Chemistry - A European Journal 2014
151 Lakhan Ekal Bylapudi Ganesh Himanshu Joshi Dilraj Lama Vikas Jain Evidence of a conserved intrinsically disordered region in the C-terminus of the stringent response protein Rel from mycobacteria. FEBS Lett. 2014
152 Amol Arunrao Pohane Himanshu Joshi Vikas Jain Molecular dissection of phage endolysin: An interdomain interaction confers host specificity in Lysin A of Mycobacterium phage D29. Journal of Biological Chemistry 2014
153 Papita Mandal Naveen Verma Gajendra Kumar Azad Vikash Singh Upendarrao Golla Raghuvir Singh Tomar Epigenetics: Role of histone proteases in cellular functions and diseases. A book chapter in ‘Molecular Mechanisms and Physiology of Disease: Implications for Epigenetics and Health’. Maulik, N.; Karagiannis, T. (Eds.) Springer press 2014
154 Gajendra Kumar Azad Raghuvir Singh Tomar The emerging role of histone proteases in regulation of various biological processes Molecular Biology Reports 2014
155 Gajendra Kumar Azad Raghuvir Singh Tomar A comprehensive review illustrating the mode of action and biological pathways targeted by promising antioxidant drug, ebselen Molecular Biology Reports 2014
156 Mintu Chandra Madhumita Mukherjee Vijay Srivastava Yumiko Saito-Nakano Tomoyoshi Nozaki Sunando Datta Insights into the GTP/GDP cycle of RabX3, a novel GTPase from Entamoeba histolytica with tandem G-domains. Biochemistry 2014
157 Raunaq Singh Nagi Ashish Shekhar Bhat Himanshu Kumar Cancer: a tale of aberrant PRR response Frontiers in Immunology 2014
158 Deepak Bharti Ashish Kumar Ranjeet Singh Mahla Sushil Kumar Harshad Ingle Hari Shankar Beenu Joshi Ashwin Ashok Raut Himanshu Kumar The role of TLR9 polymorphism in susceptibility to pulmonary tuberculosis Immunogenetics 2014
159 Kuntal Roy Electric-field induced magnetization switching in interface-coupled multiferroic heterostructures: A highly-dense, non-volatile, and ultra-low-energy computing paradigm Jl. Of Physics D- Applied Physics 2014
160 Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya Influence of Protein - Micelle Ratios and Cysteine Residues on the Kinetic Stability and Unfolding Rates of Human Mitochondrial VDAC-2 PLoS One 2014
161 Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana Comparative analysis of cross strand aromatic-Phe interactions in designed peptide beta-hairpins. Organic & Biomolecular Chemistry 2014
162 Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya Cysteine Residues Impact the Stability and Micelle Interaction Dynamics of the Human Mitochondrial beta-barrel Anion Channel hVDAC-2. PLoS One 2014
163 Radhakrishnan Mahalakshmi Ravikiran Boddepalli Unusual post-translational protein modifications : The benefits of sophistication. RSC Advances 2014
164 Radhakrishnan Mahalakshmi Punit Zadafiya Ankit Gupta Differential Contribution of Tryptophans to the Folding and Stability of the Attachment Invasion Locus Transmembrane beta-Barrel from Yersinia pestis. Scientific Reports 2014
165 Kamlesh Madhusudan Makwana Radhakrishnan Mahalakshmi Asymmetric contribution of aromatic interactions stems from spatial positioning of the interacting aryl pairs in beta-hairpins ChemBioChem 2014
166 Radhakrishnan Mahalakshmi Deepti Chaturvedi Juxtamembrane tryptophans possess distinct roles in defining the OmpX barrel-micelle boundary and packing-facilitated protein-micelle association FEBS Lett. 2014
167 Papita Mandal Naveen Verma Sakshi Chauhan Raghuvir Singh Tomar Unexpected histone H3 tail clipping activity of Glutamate dehydrogenase Journal of Biological Chemistry 2013
168 Upendarrao Golla Vikash Singh Gajendra Kumar Azad Prabhat Singh Papita Mandal Raghuvir Singh Tomar Sen1p contributes to genomic integrity by regulating expression of Ribonucleotide reductase 1 (RNR1) in Saccharomyces cerevisiae PLoS One 2013
169 Gajendra Kumar Azad Vikash Singh Upendarrao Golla Raghuvir Singh Tomar Depletion of cellular iron by curcumin leads to alteration in histone acetylation and degradation of Sml1p in Saccharomyces cerevisiae. PLoS One 2013
170 Santosh Ranjan Mohanty Bharati Kollah Vineet Kumar Sharma Amar Bahadur Singh Muneshwar Singh A. Subba Rao Methane oxidation and methane driven redox process during sequential reduction of a flooded soil ecosystem Annals of Microbiology 2013
171 Virender Batish Rashmi H. Mallapa Vineet K. Sharma Sunita Grover Draft Genome Sequence of Lactobacillus plantarum Strain Lp91, a Promising Indian Probiotic Isolate of Human Gut Origin Genome Announcements 2013
172 Sunita Grover Vineet K. Sharma Rashmi H. Mallapa Virender K. Batish Draft Genome Sequence of Lactobacillus fermentum Lf1, an Indian Isolate of Human Gut Origin Genome Announcements 2013
173 Manika Indrajit Singh Vikas Jain Tagging the Expressed Protein with 6 Histidines: Rapid Cloning of an Amplicon with Three Options. PLoS One 2013
174 Manonmani Arunachalam Sunando Datta Vineet Sadarangani New players in the same old game: a system level in silico study to predict type III secretion system and effector proteins in bacterial genomes reveals common themes in T3SS mediated pathogenesis. BMC Research Notes 2013
175 Ranjit Singh Mahla Madhawa C Reddy D. Vijaya Raghava Prasad Himanshu Kumar Sweeten PAMPs: Role of Sugar Complexed PAMPs in Innate Immunity and Vaccine Biology Frontiers in Immunology 2013
176 Sushil Kumar Harshad Ingle DVR Prasad Himanshu Kumar Recognition of Bacterial Infection by Innate Immune Sensors. Critical Reviews in Microbiology Critical Reviews in Microbiology 2013
177 Himanshu Kumar Adrian Bot Innate immune recognition mechanism and Translational Opportunities, an Editorial for special issue International Reviews in Immunology 2013
178 M Baranowski H Y Yu T Ziegelhoffer J Kominek Chandan Sahi J Marszalek E A Craig Sequential duplications of an ancient member of the DnaJ-family expanded the functional chaperone network in the eukaryotic cytosol. Mol Biol Evol 2013
179 G L Ciesielski M Plotka M Manicki B A Schilke R Dutkiewicz Chandan Sahi J Marszalek E A Craig Nucleoid localization of Hsp40 Mdj1 is important for its function in maintenance of mitochondrial DNA. Biochim Biophys Acta 2013
180 Radhakrishnan Mahalakshmi Deepti Chaturvedi Svetlana Rajkumar Maurya Modulating lipid dynamics and membrane fluidity to drive rapid folding of a transmembrane barrel Scientific Reports 2013
181 Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya Modulation of human mitochondrial voltage-dependent anion channel 2 (hVDAC-2) structural stability by cysteine-assisted barrel-lipid interactions. Journal of Biological Chemistry 2013
182 Radhakrishnan Mahalakshmi SR Raghothama Kamlesh Madhusudan Makwana Stabilizing effect of electrostatic vs aromatic interactions in diproline nucleated peptide beta-hairpins. Phys. Chem. Chem. Phys. 2013
183 Radhakrishnan Mahalakshmi Muralikrishna Lella Pro-Gly mediated conformational switch of Mycobacteriophage D29 holin transmembrane domain I is lipid concentration driven. Chemical Communications 2013
184 Radhakrishnan Mahalakshmi Deepti Chaturvedi Methionine Mutations of Outer Membrane Protein X Influence Structural Stability and beta-Barrel Unfolding. PLoS One 2013
185 Papita Mandal Gajendra Kumar Azad Raghuvir Singh Tomar Identification of a novel histone H3 specific protease activity in nuclei of chicken liver Biophysical and Biochemical Research Communication 2012
186 Gajendra Kumar Azad Shah Jaimin Balkrishna Narayanan Sathish Sangit Kumar Raghuvir Singh Tomar Multifunctional Ebselen drug functions through the activation of DNA damage response and alterations in nuclear proteins Biochemical Pharmacology 2012
187 Vineet K. Sharma Naveen Kumar Tulika Prakash Todd D. Taylor Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin PLoS One 2012
188 Pritam Khan AR Barik EM Vinod KS Sangunni Himanshu Jain KV Adarsh Coexistence of fast photodarkening and slow photobleaching in Ge 19 As 21 Se 60 thin films Optics Express 2012
189 Deepti Chaturvedi Radhakrishnan Mahalakshmi Ankit Gupta Modified CNBr cleavage protocol for efficient separation of Met-Ser containing OmpX-Om14 membrane protein fusion Intl. Rev. Biophys. Chem. 2012
190 Maria Giovanna Rossetto Erica Zanarella Genny Orso Michele Scorzeto Aram Megighian Vimlesh Kumar Antonio V Delgado-Escueta Andrea Daga Defhc1.1, a homologue of the juvenile myoclonic gene EFHC1, modulates architecture and basal activity of the neuromuscular junction in Drosophila Human Molecular Genetics 2011
191 Hidehiro Toh Vineet K. Sharma Kenshiro Oshima Shinji Kondo Masahira Hattori F. Bruce Ward Andrew Free Todd D. Taylor Complete Genome Sequences of Arcobacter butzleri ED-1 and Arcobacter sp. Strain L, Both Isolated from a Microbial Fuel Cell Journal of Bacteriology 2011
192 Tulika Prakash Kenshiro Oshima Hidetoshi Morita Shinji Fukuda Akemi Imaoka Naveen Kumar Vineet K. Sharma Seok-Won Kim Mahoko Takahashi Naruya Saitou Todd D. Taylor Hiroshi Ohno Yoshinori Umesaki Masahira Hattori Complete Genome Sequences of Rat and Mouse Segmented Filamentous Bacteria, a Potent Inducer of Th17 Cell Differentiation Cell Host and Microbe 2011
193 Kelly-Anne F Twist Elizabeth A Campbell Padraig Deighan Sergei Nechaev Vikas Jain E Peter Geiduschek Ann Hochschild Seth A Darst Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the β-subunit flap domain of Escherichia coli RNA polymerase Proceedings of the National Academy of Sciences 2011
194 Himanshu Kumar Taro Kawai Shizuo Akira Pathogen Recognition by the Innate Immune System International Reviews in Immunology 2011