Publications

SNo	Authors	Title of Article	Journal	Year
1	Vineet Kumar Sharma Kundan Kumar Shubham Jaiswal Gaurao Dhoke Ashok Sharma	Mechanistic and structural insight into promiscuity based metabolism of cardiac drug digoxin by gut microbial enzyme	JOURNAL OF CELLULAR BIOCHEMISTRY	2018
2	Sourav Datta Katharina Bursch Premachandran Yadukrishnan Nikhil Job Henrik Johansson	Two B-box proteins regulate photomorphogenesis by oppositely modulating HY5 through their diverse C-terminal domains	Plant Physiology	2018
3	Pullikan Joby Abhijit Maji Darshan Dhakan Tony Grace	Gut Microbial Dysbiosis in Indian Children with Autism Spectrum Disorders	Microbial Ecology	2018
4	Ajith Ashokan Vinita Gowda	Describing terminologies and discussing records: More discoveries of vivipary in the genus Hedychium J. Koenig (Zingiberaceae) from Northeast India	Phytokeys	2018
5	Premachandran Yadukrishnan Nikhil Job Henrik Johansson Sourav Datta	Opposite Roles of Group IV BBX Proteins: Exploring Missing Links between Structural and Functional Diversity	Plant Signaling & Behavior	2018
6	Deepak Chopra S K Nayak Rahul Shukla M K Reddy T N Guru Row	Quantitative Investigation of intermolecular interactions in dimorphs of 3-Chloro-N-(2-fluorophenyl)benzamide and 2-Iodo-N-(4- bromophenyl)benzamide.	Journal of Chemical Sciences	2018
7	Ruchika Mishra Zeeshan Mushtaq Ramprasad Regar Bhagaban Mallik Vimlesh Kumar Jeyaraman Sankar	Selective Imaging of Lipids in Adipocytes Using an Imidazolyl Derivative of Perylenebisimide	ChemBioChem	2018
8	Radhakrishnan Mahalakshmi Deepti Chaturvedi	Position–specific contribution of interface tryptophans on membrane protein energetics	Biochim. Biophys. Acta (Biomembranes)	2018
9	Radhakrishnan Mahalakshmi Muralikrishna Lella	Solvation Driven Conformational Transitions in the Second Transmembrane Domain of Mycobacteriophage Holin.	Biopolymers	2017
10	Ankit Gupta Bharat Ramasubramanian Iyer Radhakrishnan Mahalakshmi	Approaches for preparation and biophysical characterization of transmembrane β-barrels	Springer Protocols Handbooks	2017
11	Ashok K. Sharma Gopal Srivastava	ToxiM: A Toxicity Prediction Tool for Small Molecules Developed Using Machine Learning and Chemoinformatics Approaches	Frontiers in Pharmacology	2017
12	Abhijit Maji Richa Misra Darshan Dhakan Vineet K Sharma Rup Lal Yogendra Singh	Gut microbiome contributes to impairment of immunity in pulmonary tuberculosis patients by alteration of butyrate and propionate producers	Environmental Microbiology	2017
13	Muralikrishna Lella Radhakrishnan Mahalakshmi	Metamorphic Proteins: Emergence of dual protein folds from one primary sequence.	Biochemistry	2017
14	Bharat Iyer Punit Zadafiya Pallavi Vetal Radhakrishnan Mahalakshmi	Energetics of side chain partitioning of β-signal residues in unassisted folding of a transmembrane β-barrel protein.	Journal of Biological Chemistry	2017
15	Bylapudi Ganesh Manika Indrajit Singh Vikas Jain	On the domains of T4 phage sliding clamp gp45: an intermolecular crosstalk governs structural stability and biological activity.	BBA-General Subjects	2017
16	Ajith Ashokan Vinita Gowda	Diversity of the genus Hedychium J. Koenig (Zingiberaceae) in the Northeast of India-I.	Heliconia Society International Bulletin.	2017
17	Amit K Verma Danish Diwan Sandeep Raut Neha Dobriyal Rebecca E Brown Vinita Gowda Justin K Hines Chandan Sahi	Evolutionary Conservation and Emerging Functional Diversity of the Cytosolic Hsp70:J Protein Chaperone Network of Arabidopsis thaliana.	G3: Genes Genomes Genetics	2017
18	Kuldeep Verma sunando datta	Heavy subunit of cell surface Gal/GalNAc lectin (Hgl) undergoes degradation via endo-lysosomal compartments in Entamoeba histolytica.	Small GTPases	2017
19	Jerome Gilleron sandra Lacas-Jarvais Sameena Parveen Jini Sugatha Amulya Priya Sunando Datta	Essential and selective role of SNX12 in transport of endocytic and retrograde cargo	Journal of Cell Science	2017
20	Kuldeep Verma	The monomeric GTPase Rab35 regulates phagocytic cup formation and phagosomal maturation in Entamoeba histolytica	Journal of Biological Chemistry	2017
21	Himanshu Kumar Adrian Bot	Role of immune cells, immune modulating factors and immunotoxins in cancer immunotherapy	International Reviews in Immunology	2017
22	Himanshu Kumar Adrian Bot	Role of MicroRNAs in shaping innate immunity and as therapeutic targets for autoimmune diseases	International Reviews in Immunology	2017
23	Sathiya Pandi Narayanan Smriti Singh Sanjeev Shukla	A saga of cancer epigenetics: linking epigenetics to alternative splicing	Biochemical J	2017
24	Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya Bhawna Burdak Parini Surti Manoj S Patel Vikas Jain	Structural plasticity of T4 transcription co-activator gp33 revealed by a protease-resistant unfolded state	Biophysical and Biochemical Research Communication	2017
25	Neha Dobriyal Prerna Tripathi Susrita Sarkar Yogesh Tak Amit K Verma Chandan Sahi	Partial dispensability of Djp1's J domain in peroxisomal protein import in Saccharomyces cerevisiae results from genetic redundancy with another class II J protein, Caj1	Cell Stress and Chaperones	2017
26	Radhakrishnan Mahalakshmi Svetlana Maurya	Mitochondrial VDAC2 and cell homeostasis: highlighting hidden structural features and unique functionalities.	Biological Reviews	2017
27	Ram Kumar Mishra Mansi Gujrati Vaibhav Kumar Shukla Jai Shankar Singh Ashutosh Kumar	Backbone and side-chain resonance assignments of Plasmodium falciparum SUMO	Biomolecular NMR assignments	2017
28	Bhagaban Mallik Vimlesh Kumar	Regulation of actin-Spectrin Cytoskeleton by ICA69 at the Drosophila Neuromuscular Junction	Communicative and Integrative Biology	2017
29	Rupali Yadav Vijay Sherivastava Watanabe Natsuki Priya Tomar Madhumita Mukherjee samudrala Gourinath Kumiko Nakada-Tsukai Tomoyoshi Nozaki Sunando Datta	Structural and thermodynamic characterization of metal binding in Vps29 from Entamoeba histolytica: Implication in retromer function.	Molecular Microbiology	2017
30	Ajit Chande Claudia Firrito Massimo Pizzato	SERINC5: not all splice variants work against HIV	Journal of Public Health and Emergency	2017
31	Atul Samaiya Rajendra Kumar Panday Sandhya Yadav Neha Ahuja Amit Gupta Kajal Biswas Sathiya Pandi Narayanan Smriti Singh Shyam K Sharan Sanjeev Shukla	Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect	Proceedings of the National Academy of Sciences	2017
32	Himanshu Kumar Adrian Bot	Innate immunity and infectious diseases–An update	International Reviews in Immunology	2017
33	Himanshu Kumar Adrian Bot	Antibodies in pathogenesis and management of diseases	International Reviews in Immunology	2017
34	Soumya Kamilla Vikas Jain	Robust high throughput real-time monitoring assay for the specific screening of bacterial cell envelope inhibitors	Proc. Indian Natn. Sci. Acad.	2017
35	Himanshu Joshi Vikas Jain	Novel method to rapidly and efficiently lyse Escherichia coli for the isolation of recombinant protein	Analytical Biochemistry	2017
36	Manika Indrajit Singh Vikas Jain	Identification and characterization of an inside-out folding intermediate of T4 phage sliding clamp	Biophysical Journal	2017
37	Amit K Verma	Evolutionary Conservation and Emerging Functional Diversity of the Cytosolic Hsp70:J Protein Chaperone Network of Arabidopsis thaliana.	G3: Genes Genomes Genetics	2017
38	Bhagban Mallik Sandeep Raut Arpan Parichha Chandan Sahi Vimlesh Kumar	RNAi-Mediated Reverse Genetic Screen Identified Drosophila Chaperones Regulating Eye and Neuromuscular Junction Morphology.	G3: Genes Genomes Genetics	2017
39	vineet k sharma sudheer gupta ashok sharma vibhuti shastri midhun madhu	Prediction of Anti-inflammatory proteins/peptides: an insilico approach.	Journal of Translational Medicine	2017
40	vineet k sharma shubham jaiswal rituja saxena	Draft Genome Sequence of Pseudomonas hussainii Strain MB3, a Denitrifying Aerobic Bacterium Isolated from the Rhizopheric Region of Mangrove Trees in the Andaman Islands, India.	Genome Announcements	2017
41	vineet k sharma parul mittal rituja saxena	Draft Genome Sequence of Anoxybacillus mongoliensis Strain MB4, a Sulfur-Utilizing Aerobic Thermophile Isolated from a Hot Spring in Tattapani, Central India.	Genome Announcements	2017
42	Nikhil Chaudhary Ankit Gupta vineet k sharma	BioFuelDB: a database and prediction server of enzymes involved in biofuels production.	Journal of Biomolecular Structure and Dynamics	2017
43	vineet k sharma ashok sharma nikhil chaudhary Shubham jaiswal	.A novel approach for the prediction of species-specific biotransformation of xenobiotic/drug molecules by human gut microbiota.	Scientific Reports	2017
44	vineet k sharma sudheer gupta parul mittal midhun k madhu	IL17eScan: a tool for the identification of peptides inducing IL-17 response.	Frontiers in Immunology	2017
45	Himanshu Joshi Surya P Seniya Venkatesan Suryanarayanan Neelam D Patidar Sanjeev K Singh Vikas Jain	Dissecting the structure–function relationship in lysozyme domain of mycobacteriophage D29-encoded peptidoglycan hydrolase	FEBS Lett.	2017
46	Pilendra Singh Tomar Bahadur Kumar Thakre Biological Sciences SK Raghuvir Patra	A Pyridoindole-Based Multifunctional Bioprobe: pH-Induced Fluorescence Switching and Specific Targeting of Lipid Droplets	Chemistry -Asian Journal	2017
47	Upendarrao Golla Swati Swagatika Sakshi Chauhan Raghuvir S Tomar	A systematic assessment of chemical, genetic, and epigenetic factors influencing the activity of anticancer drug KP1019 (FFC14A)	Oncotarget	2017
48	Puja Kumari Himanshu Kumar	Viral Deubiquitinases: Role in Evasion of Anti-viral Innate Immunity	Critical Reviews in Microbiology	2017
49	Shalabh Mishra Himanshu Kumar	Balancing Anti-viral innate immunity and immune homeostasis	Cellular & molecular Immunology	2017
50	Puja Kumari Irene Saha Athira Narayanan Sathish Narayanan Akinori Takaoka Nachimuthu Senthil Kumar Prafullakumar Tailor Himanshu Kumar	Essential role of HCMV deubiquitinase in promoting oncogenesis by targeting anti-viral innate immune signaling pathways	Cell Death and Disease	2017
51	Bhagaban Mallik Manish Kumar Dwivedi Zeeshan Mushtaq Manisha Kumari Praveen Kumar Verma Vimlesh Kumar	Regulation of Neuromuscular Junction Organization by Rab2 and its Effector ICA69 in Drosophila	Development	2017
52	Saumitra Dey Choudhury	Altered Translational Repression of an RNA-binding Protein, elav by AOA2-causative Senataxin Mutation	Synapse	2017
53	Sandeep Raut Bhagaban Mallik Arpan Parichha Amrutha V Chandan Sahi Vimlesh Kumar	RNAi-mediated Reverse Genetic Screen Identified Drosophila Chaperones Regulating Eye and Neuromuscular Junction Morphology	G3: Genes Genomes Genetics	2017
54	Radhakrishnan Mahalakshmi Svetlana Maurya Bhavna Burdak Parini Surti Manoj Patel Vikas Jain	Structural plasticity of T4 transcription co-activator gp33 revealed by a protease-resistant unfolded state	Biophysical and Biochemical Research Communication	2017
55	Deepti Chaturvedi Radhakrishnan Mahalakshmi	Transmembrane β-barrels: Evolution, folding and energetics.	Biochim. Biophys. Acta (Biomembranes)	2017
56	Muralikrishna Lella Radhakrishnan Mahalakshmi	Engineering a Transmembrane Nanopore Ion Channel from a Membrane Breaker Peptide.	The Journal of Physical Chemistry Letters	2016
57	Saumitra Dey Choudhury Zeeshan Mushtaq Suneel Reddi-Alla Sruthi S Balakrishnan Rajan S Thakur KS Krishnan Padinjat Raghu Mani Ramaswami Vimlesh Kumar	sigma2-adaptin Facilitates Basal Synaptic Transmission and is required for Regenerating Endo- Exo Cycling Pool under High Frequency Nerve Stimulation in Drosophila	GENETICS	2016
58	Zeeshan Mushtaq Saumitra Dey Choudhury Sri Krishna Gangwar Genny Orso Vimlesh Kumar	Human Senataxin Modulates Structural Plasticity of the Neuromuscular Junction in Drosophila through a Neuronally Conserved TGFβ Signalling Pathway	Neurodegenerative Diseases	2016
59	Madhumita Mukherjee MIntu Chandra Kuldeep Verma Rupali Yadav Sunando Datta	Biophysical studies on calcium and carbohydrate binding to carbohydrate recognition domain of Gal/GalNAc lectin from Entamoeba histolytica: insights into host cell adhesion.	J. Biochemistry	2016
60	Sudheer Gupta Midhun K. Madhu Ashok K. Sharma Vineet K. Sharma	ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins	Journal of Translational Medicine	2016
61	Vineet K. Sharma Darshan Dhakan Harish K. Sanjiv Kumar Ashok K. Sharma	Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins	BMC Genomics	2016
62	Vineet K. Sharma Ashok K. Sharma Harish K. Vishnu P.K. Prasoodanan Sanjiv Kumar Ankit Gupta	Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes	Frontiers in Microbiology	2016
63	Vineet K. Sharma Nikhil Chaudhary Rituja Saxena Darshan Dhakan	Draft Genome Sequence of Tepidimonas taiwanensis Strain MB2, a Chemolithotrophic Thermophile Isolated from a Hot Spring in Central India	American Society of Microbiology All-Inclusive Package	2016
64	S. D. Das Kusum Dhochak Vikram Tripathi	Kondo route to spin inhomogeneities in the honeycomb Kitaev model	Physical Review B	2016
65	Rituja Saxena Vineet K. Sharma	A Metagenomic Insight Into the Human Microbiome: Its Implications in Health and Disease	Medical and Health Genomics	2016
66	Tomoyoshi Nozaki Yumiko Saito-Nakano Mintu Chandra Vijay Srivastava Sunando Datta	Crystal Structure Analysis of Wild Type and Fast Hydrolyzing Mutant of EhRabX3, a Tandem Ras Superfamily GTPase from Entamoeba histolytica	Journal of Molecular Biology	2016
67	Sakshi Chauhan Mandal Papita Raghuvir Singh T	The biochemical analysis reveals multifactorial mechanism of histone H3 clipping by Chicken Liver Histone H3 protease	Biochemistry	2016
68	Manika Indrajit Singh Abhishek Anil Dubey Vikas Jain	Rapid and robust PCR-based all-recombinant cloning methodology	PLoS One	2016
69	Gajendra Azad	Partial purification of histone H3 proteolytic activity from budding yeast Saccharomyces cerevisiae	Yeast	2016
70	Muralikrishna Lella Soumya Kamilla Vikas Jain Radhakrishnan Mahalakshmi	Molecular mechanism of holin transmembrane domain I in pore formation and bacterial cell death	ACS Chemical Biology	2016
71	Sakshi Chauhan	Efficient expression and purification of biologically active human cystatin proteins	Protein Expression and Purification	2016
72	Sunando Datta Tomo Nozaki Kuldeep Verma	Role of EhRab7A in phagocytosis of type 1 fimbriated E. coli by Entamoeba histolytica.	Molecular Microbiology	2016
73	Mintu Chandra Sunando Datta	Role of cysteine residues in the redox-regulated oligomerization and nucleotide binding to EhRabX3.	Molecular and Biochemical Parasitology	2016
74	Santhosh Kumar Sariki Pushpendra Kumar Sahu Upendarao Golla Gajendra Kumar Azad Vikash Raghuvir Singh T	Sen1, the homolog of human Senataxin, is critical for survival through regulation of cellular redox homeostasis, mitochondrial function and TOR in Saccharomyces cerevisiae	FEBS Journal	2016
75	Upendarrao Golla Deepthi Joseph Raghvir Singh Tomar	Combined Transcriptomics and Chemical-Genetics Reveal Molecular Mode of Action of Valproic acid, an Anticancer Molecule using Budding Yeast Model	Scientific Reports	2016
76	Mintu Chandra Runjhun Saran Sunando Datta	Deciphering the role of Atg5 in nucleotide dependent interaction of Rab33B with the dimeric complex, Atg5-Atg16L1. Chandra M, Saran R, Datta S.	Biophysical and Biochemical Research Communication	2016
77	Nazmul Haque Sanjeev Shukla Kyster K Nanan Maria F Prigge Garima Verma Morgan Thenoz Marc A Bailly David Sturgill Ryan J Marina Shalini Oberdoerffer	TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing	EMBO J	2016
78	Svetlana Maurya Radhakrishnan Mahalakshmi	Control of human VDAC-2 scaffold dynamics by interfacial tryptophans is position specific.	Biochim. Biophys. Acta (Biomembranes)	2016
79	Priya Vijayakumar Sourav Datta Liam Dolan	RSL4 promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth.	New Phytologist	2016
80	Mohan Reddy Bodireddy Ranjeet Singh Mahla P Md Khaja Mohinuddin G Trivikram Reddy D Vijaya Raghav Prasad Himanshu Kumar	Discovery of a new class of 16-membered (2Z, 11Z)-3, 11-di (aryl/naphthyl)-1, 13-dioxa-5, 9-dithia-2, 12-diazacyclohexadeca-2, 11-dienes as anti-tumor agents	RSC Advances	2016
81	Diwakar D Kulkarni Himanshu Kumar Pradip N Gandhale Periyasamy Vijakumar Anamika Mishra Pradip B Ranaware Ashwin Ashok Raut	Genome Wide Host Gene Expression Analysis in Chicken Lungs Infected with Avian Influenza Viruses	PLoS One	2016
82	Mohammed Fawaz Periyasamy Vijaykumar Anamika Mishra Pradip N Gandhale Rupam Dutta Nitin M Kamble Shashi B Sudhakar Parimal Roychoudhary Himanshu Kumar Diwakar D Kulkarni Ashwin Ashok Raut	Duck gut viral metagenome analysis captures snapshot of viral diversity.	BMC Genomics	2016
83	Vineet K Sharma	Prediction of Biofilm Inhibiting Peptides: An In Silico Approach.	Frontiers in Microbiology	2016
84	Munazza T Fatima Abhishek Chanchal Prabhu S Yavvari Somnath D Bhagat Mansi Gujrati Ram Kumar Mishra Aasheesh Srivastava	Cell Permeating Nano-Complexes of Amphiphilic Polyelectrolytes Enhance Solubility, Stability, and Anti-Cancer Efficacy of Curcumin	Biomacromolecules	2016
85	vineet k sharma Sudheer Gupta Ashok Sharma Shubham jaiswal	Prediction of Biofilm Inhibiting Peptides: An In Silico Approach.	Frontiers in Microbiology	2016
86	vineet k sharma rituja saxena darshan dhakan parul mittal	Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments.	Frontiers in Microbiology	2016
87	Chetana Ajit Tamadaddi Chandan Sahi	J domain independent functions of J proteins	Cell Stress and Chaperones	2016
88	Gajendra Kumar Azad Raghuvir Singh Tomar	The multifunctional transcription factor Rap1: a regulator of yeast physiology	Frontiers Bioscience	2016
89	Upendarrao Golla Amit Adhikary Amit Kumar Mondal Raghuvir Singh Tomar Sanjit Konar	Synthesis, structure, magnetic and biological activity studies of bis-hydrazone derived Cu(II) and Co(II) coordination compounds	Dalton Transactions	2016
90	Manika Indrajit Singh Vikas Jain	Molecular dissection of the homotrimeric sliding clamp of T4 phage: Two domains of a subunit display asymmetric characteristics	Biochemistry	2016
91	Soumya Kamilla Vikas Jain	Mycobacteriophage D29 holin C-terminal region functionally assists in holin aggregation and bacterial cell death	FEBS Journal	2016
92	Angela Anna Messina Matteo Ceccarelli Salvatore Foti Andrea Magrì Mariano Andrea Scorciapino Francesca Guarino Carlo Guardiani Deepti Chaturvedi Ankit Gupta Rosaria Saletti Vanessa Checchetto Simona Reina Radhakrishnan Mahalakshmi Ildiko Szabo Vito De Pinto	VDAC3 as a sensor of oxidative state of the intermembrane space of mitochondria: the putative role of cysteine residue modifications.	Oncotarget	2016
93	Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya	VDAC-2: Mitochondrial outer membrane regulator masquerading as a channel?	FEBS Journal	2016
94	Vikas Jain Soumya Kamilla Muralikrishna Lella Radhakrishnan Mahalakshmi	Molecular Mechanism of Holin Transmembrane Domain I in Pore Formation and Bacterial Cell Death.	ACS Chemical Biology	2016
95	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	Stereopositional Outcome in the Packing of Dissimilar Aromatics in Designed beta-Hairpins	Chemistry - A European Journal	2016
96	Angela A. Messina Matteo Ceccarelli Salvatore Foti Andrea Magrì Mariano Andrea Scorciapino Francesca Guarino Carlo Guardiani Deepti Chaturvedi Ankit Gupta Rosaria Saletti Vanessa Checchetto Simona Reina Radhakrishnan Mahalakshmi Ildiko Szabo Vito De Pinto	Unexpected Modifications of Cysteines in VDAC3: Indication that VDAC3 may Signal the Mitochondrial Intermembrane Redox State	Biophysical Journal	2016
97	Radhakrishnan Mahalakshmi Angela Messina Ankit Gupta Simona Reina Vito De Pinto	Role of cysteines in mammalian VDAC isoforms' function.	Biochim. Biophys. Acta (Bioenergetics)	2016
98	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	Capping beta-Hairpin with N-terminal D-Amino Acid Stabilizes Peptide Scaffold.	Biopolymers	2016
99	Gajendra Kumar Azad Vikash Singh Shivani Barnawal Mayur J Thakare Raghuvir Singh Tomar	The transcription factor Rap1p is required for tolerance to cell wall-perturbing agents and for cell wall maintenance in Saccharomyces cerevisiae	FEBS Lett.	2015
100	Vikash Singh Gajendra Kumar Azad Santhosh Kumar Sariki Raghuvir Singh Tomar	Flocculation in Saccharomyces cerevisiae is regulated by RNA/DNA helicase Sen1p	FEBS Lett.	2015
101	Upendarrao Golla Bandi Goutham Raghuvir Singh Tomar	Molecular Cytotoxicity Mechanisms of the Herbicide Allyl Alcohol (Acrolein) in Budding Yeast	Chemical Research in Toxicology	2015
102	Amol Arunrao Pohane Vikas Jain	Insights into the regulation of bacteriophage endolysin: Multiple means to the same end	Microbiology	2015
103	Vineet K. Sharma Darshan Dhakan Nikhil Chaudhary Rituja Saxena	Draft Genome Sequence of Gulbenkiania mobilis Strain MB1, a Sulfur-Metabolizing Thermophile Isolated from a Hot Spring in Central India	Genome Announcements	2015
104	Ashok K. Sharma Ankit Gupta Sanjiv Kumar Darshan Dhakan Vineet K. Sharma	Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences	Genomics	2015
105	Ankit Gupta Vineet K. Sharma	Using the taxon-specific genes for the taxonomic classification of bacterial genomes	BMC Genomics	2015
106	Nikhil Chaudhary Ashok K. Sharma Piyush Agarwal Ankit Gupta Vineet K. Sharma	16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets	PLoS One	2015
107	Merlyn Emmanuel Yumiko Saito-Nakano Tomoyoshi Nozaki Sunando Datta	Small GTPase Rab21 mediates fibronectin induced actin reorganization in Entamoeba histolytica: implications in pathogen invasion.	PLOS Pathogen	2015
108	Amol Arunrao Pohane Neelam Devidas Patidar Vikas Jain	Modulation of domain-domain interaction and protein's function by a charged linker: A case study of mycobacteriophage D29 endolysin.	FEBS Lett.	2015
109	Aashish Sharma Amol Arunrao Pohane Sandhya Bansal Avinash Bajaj Vikas Jain Aasheesh Srivastava	Cell Penetrating Synthetic Antimicrobial Peptides (SAMPs) Exhibiting Potent and Selective Killing of Mycobacterium by Targeting Its DNA	Chemistry - A European Journal	2015
110	David Lambright Yannis Kalaidzidis Amulya Priya Inna Kalaidzidis Sunando Datta	Molecular insights into Rab7-mediated endosomal recruitment of core retromer: deciphering the role of Vps26 and Vps35.	Traffic	2015
111	Kuldeep Verma	Insights into endosomal maturation of human holo-transferrin in the enteric parasite Entamoeba histolytica: essential roles of Rab7A and Rab5 in biogenesis of giant early endocytic vacuoles.	Cellular Microbiology	2015
112	Sathiya Pandi Narayanan Smriti Singh Amit Gupta Sandhya Yadav Shree Ram Singh Sanjeev Shukla	Integrated genomic analyses identify KDM1A’s role in cell proliferation via modulating E2F signaling activity and associate with poor clinical outcome in oral cancer	Cancer Letters	2015
113	Puja Kumari Sathish Narayanan Himanshu Kumar	Herpesviruses: interfering innate immunity by targeting viral sensing and interferon pathways	Reviews in Medical Virology	2015
114	Himanshu Kumar Ashwin Ashok Raut Akinori Takaoka Shizuo Akira Taro Kawai Ashish Kumar Ranjeet Singh Mahla Shalabh Mishra Harshad Ingle Sushil Kumar	IPS-1 differentially induces TRAIL, BCL2, BIRC3 and PRKCE in type I interferons-dependnt and independent anticancer activity	Cell Death and Disease	2015
115	Anamika MIshra Ashwin Ashok Raut Sushil Kumar Harshad Ingle Diwakar Dattatraya Kulkarni Takeshi Kameyama Akinori Takaoka Shizuo Akira Himanshu Kumar	The microRNA miR-485 targets host and influenza virus transcripts to regulate antiviral immunity and restrict viral replication	Science Signaling	2015
116	Liam Dolan Helen Prescott Sourav Datta	Intensity of a pulse of RSL4 transcription factor synthesis determines Arabidopsis root hair cell size.	Nature Plants	2015
117	Kirtimaan Syal Himanshu Joshi Dipankar Chatterji Vikas Jain	Novel pppGpp binding site at the C-terminal region of Rel enzyme from Mycobacterium smegmatis	FEBS Journal	2015
118	Svetlana Rajkumar Maurya Deepti Chaturvedi Bharat Ramasubramanian Iyer Ankit Gupta Radhakrishnan Mahalakshmi	Thermodynamic, structural and functional properties of membrane protein inclusion bodies are analogous to purified counterparts: Case study from bacteria and humans.	RSC Advances	2015
119	Kamlesh Makwana Radhakrishnan Mahalakshmi	Nature of aryl-tyrosine interactions contribute to beta-hairpin scaffold stability: NMR evidence for alternate ring geometry.	Phys. Chem. Chem. Phys.	2015
120	Radhakrishnan Mahalakshmi	Folding and stability of transmembrane beta-barrels of bacterial and human origin: Probing underlying similarities and principal differences using in vitro systems.	Proc. Indian Natn. Sci. Acad.	2015
121	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	NMR Analysis of Tuning Cross-Strand Phe/Tyr/Trp - Trp Interactions in Designed beta-Hairpin Peptides: Terminal Switch from L- to D-Amino Acid as a Strategy for beta-Hairpin Capping.	J. Phys. Chem. B	2015
122	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	Trp-Trp Cross-Linking: A Structure-Reactivity Relationship in the Formation and Design of Hyperstable Peptide beta-Hairpin and alpha-Helix Scaffolds.	Organic Letters	2015
123	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	Structure Stabilizing Role of Aromatic Interactions is Decided by Spatial Arrangement of Aromatic Pairs: A Case Study With Designed Peptide beta-Hairpins.	Peptides	2015
124	Bharat Ramasubramanian Iyer Radhakrishnan Mahalakshmi	Residue-dependent thermodynamic cost and barrel plasticity balances activity in the PhoPQ-activated enzyme PagP of Salmonella typhimurium	Biochemistry	2015
125	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	Implications of Aromatic-Aromatic Interactions: From Protein Structures to Peptide Models.	Protein Science	2015
126	Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya	N-helix and cysteines inter-regulate human mitochondrial VDAC-2 function and biochemistry.	Journal of Biological Chemistry	2015
127	Gajendra Kumar Azad Vikash Singh Raghuvir Singh Tomar	Assessment of the biological pathways targeted by isocyanate using N-succinimidyl N-methylcarbamate on budding yeast Saccharomyces cerevisiae.	PLoS One	2014
128	Shivani Baranwal Amrendar M Reddy Papita Mandal Gajendra Kumar Azad Vikash Singh Raghuvir Singh Tomar	Anti-cancer drug KP1019 induces Hog1 phosphorylation and protein ubiquitination in Saccharomyces cerevisiae	Eur J. Pharmacology	2014
129	Vikash Singh Gajendra Kumar Azad Papita Mandal Amrendar M Reddy Raghuvir Singh Tomar	Anti-cancer drug KP1019 modulates epigenetics and induces DNA damage response in Saccharomyces cerevisiae	FEBS Lett.	2014
130	Shivani Barnawal Gajendra Kumar Azad Vikash Singh Raghuvir Singh Tomar	Signaling of chloroquine-induced stress in the yeast Saccharomyces cerevisiae requires the Hog1 and Slt2 MAPK Pathways	Antimicrobial Agents and Chemotherapy	2014
131	Papita Mandal Sakshi Chauhan Raghuvir Tomar	H3 clipping activity of glutamate dehydrogenase is regulated by stefin B and chromatin structure	FEBS Journal	2014
132	Gajendra Kumar Azad Vikash Singh Mayur J Thakare Shivani Barnawal Raghuvir Singh Tomar	Mitogen-activated protein kinase Hog1 is activated in response to curcumin exposure in the budding yeast Saccharomyces cerevisiae	BMC Microbiology	2014
133	Gajendra Kumar Azad Vikash Singh Papita Mandal Prabhat Singh Upendarrao Golla Sakshi Chauhan Shivani Barnawal Raghuvir Singh Tomar	Ebselen induces reactive oxygen species (ROS)-mediated cytotoxicity in Saccharomyces cerevisiae with inhibition of glutamate dehydrogenase being a target	FEBS Open Biol	2014
134	Sanjit Konar Soumyabrata Goswami Qysar Maqbool Aasheesh Srivastava	Transparent, free-standing, flexible and selective CO 2 adsorbent films fabricated from homopolymer/metal salt hybrid gels	Journal of Materials Chemistry A, B and C	2014
135	Amarendar Reddy M Aasheesh Srivastava	Mechano-responsive gelation of water by a short alanine-derivative	Soft Matter	2014
136	Ankit Gupta Rohan Kapil Darshan Dhakan Vineet K. Sharma	MP3: A Software Tool for the Prediction of Pathogenic Proteins in Genomic and Metagenomic Data	PLoS One	2014
137	Vineet K. Sharma Members of International Glossina Genome Initiative	Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis	Science	2014
138	Sunando Datta Mintu Chandra Vijay Srivastava	Crystallization and preliminary X-ray analysis of RabX3, a tandem GTPase from Entamoeba histolytica	Acta Crystallographica section F	2014
139	Srinivas Samala Pragyan Pallavi Ravi Kumar Rajesh K Arigela Gajendra Singh Ravi Sankar Ampapathi Amulya Priya Sunando Datta Abhijit Patra Bijoy Kundu	One-Pot Synthesis of Highly Fluorescent Pyrido[1,2-a]indole Derivatives through CH/NH Activation: Photophysical Investigations and Application in Cell Imaging	Chemistry - A European Journal	2014
140	Lakhan Ekal Bylapudi Ganesh Himanshu Joshi Dilraj Lama Vikas Jain	Evidence of a conserved intrinsically disordered region in the C-terminus of the stringent response protein Rel from mycobacteria.	FEBS Lett.	2014
141	Amol Arunrao Pohane Himanshu Joshi Vikas Jain	Molecular dissection of phage endolysin: An interdomain interaction confers host specificity in Lysin A of Mycobacterium phage D29.	Journal of Biological Chemistry	2014
142	Papita Mandal Naveen Verma Gajendra Kumar Azad Vikash Singh Upendarrao Golla Raghuvir Singh Tomar	Epigenetics: Role of histone proteases in cellular functions and diseases. A book chapter in ‘Molecular Mechanisms and Physiology of Disease: Implications for Epigenetics and Health’. Maulik, N.; Karagiannis, T. (Eds.)	Springer press	2014
143	Gajendra Kumar Azad Raghuvir Singh Tomar	The emerging role of histone proteases in regulation of various biological processes	Molecular Biology Reports	2014
144	Gajendra Kumar Azad Raghuvir Singh Tomar	A comprehensive review illustrating the mode of action and biological pathways targeted by promising antioxidant drug, ebselen	Molecular Biology Reports	2014
145	Mintu Chandra Madhumita Mukherjee Vijay Srivastava Yumiko Saito-Nakano Tomoyoshi Nozaki Sunando Datta	Insights into the GTP/GDP cycle of RabX3, a novel GTPase from Entamoeba histolytica with tandem G-domains.	Biochemistry	2014
146	Raunaq Singh Nagi Ashish Shekhar Bhat Himanshu Kumar	Cancer: a tale of aberrant PRR response	Frontiers in Immunology	2014
147	Deepak Bharti Ashish Kumar Ranjeet Singh Mahla Sushil Kumar Harshad Ingle Hari Shankar Beenu Joshi Ashwin Ashok Raut Himanshu Kumar	The role of TLR9 polymorphism in susceptibility to pulmonary tuberculosis	Immunogenetics	2014
148	Kuntal Roy	Electric-field induced magnetization switching in interface-coupled multiferroic heterostructures: A highly-dense, non-volatile, and ultra-low-energy computing paradigm	Jl. Of Physics D- Applied Physics	2014
149	Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya	Influence of Protein - Micelle Ratios and Cysteine Residues on the Kinetic Stability and Unfolding Rates of Human Mitochondrial VDAC-2	PLoS One	2014
150	Radhakrishnan Mahalakshmi Kamlesh Madhusudan Makwana	Comparative analysis of cross strand aromatic-Phe interactions in designed peptide beta-hairpins.	Organic & Biomolecular Chemistry	2014
151	Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya	Cysteine Residues Impact the Stability and Micelle Interaction Dynamics of the Human Mitochondrial beta-barrel Anion Channel hVDAC-2.	PLoS One	2014
152	Radhakrishnan Mahalakshmi Ravikiran Boddepalli	Unusual post-translational protein modifications : The benefits of sophistication.	RSC Advances	2014
153	Radhakrishnan Mahalakshmi Punit Zadafiya Ankit Gupta	Differential Contribution of Tryptophans to the Folding and Stability of the Attachment Invasion Locus Transmembrane beta-Barrel from Yersinia pestis.	Scientific Reports	2014
154	Kamlesh Madhusudan Makwana Radhakrishnan Mahalakshmi	Asymmetric contribution of aromatic interactions stems from spatial positioning of the interacting aryl pairs in beta-hairpins	ChemBioChem	2014
155	Radhakrishnan Mahalakshmi Deepti Chaturvedi	Juxtamembrane tryptophans possess distinct roles in defining the OmpX barrel-micelle boundary and packing-facilitated protein-micelle association	FEBS Lett.	2014
156	Papita Mandal Naveen Verma Sakshi Chauhan Raghuvir Singh Tomar	Unexpected histone H3 tail clipping activity of Glutamate dehydrogenase	Journal of Biological Chemistry	2013
157	Upendarrao Golla Vikash Singh Gajendra Kumar Azad Prabhat Singh Papita Mandal Raghuvir Singh Tomar	Sen1p contributes to genomic integrity by regulating expression of Ribonucleotide reductase 1 (RNR1) in Saccharomyces cerevisiae	PLoS One	2013
158	Gajendra Kumar Azad Vikash Singh Upendarrao Golla Raghuvir Singh Tomar	Depletion of cellular iron by curcumin leads to alteration in histone acetylation and degradation of Sml1p in Saccharomyces cerevisiae.	PLoS One	2013
159	Santosh Ranjan Mohanty Bharati Kollah Vineet Kumar Sharma Amar Bahadur Singh Muneshwar Singh A. Subba Rao	Methane oxidation and methane driven redox process during sequential reduction of a flooded soil ecosystem	Annals of Microbiology	2013
160	Virender Batish Rashmi H. Mallapa Vineet K. Sharma Sunita Grover	Draft Genome Sequence of Lactobacillus plantarum Strain Lp91, a Promising Indian Probiotic Isolate of Human Gut Origin	Genome Announcements	2013
161	Sunita Grover Vineet K. Sharma Rashmi H. Mallapa Virender K. Batish	Draft Genome Sequence of Lactobacillus fermentum Lf1, an Indian Isolate of Human Gut Origin	Genome Announcements	2013
162	Manika Indrajit Singh Vikas Jain	Tagging the Expressed Protein with 6 Histidines: Rapid Cloning of an Amplicon with Three Options.	PLoS One	2013
163	Manonmani Arunachalam Sunando Datta Vineet Sadarangani	New players in the same old game: a system level in silico study to predict type III secretion system and effector proteins in bacterial genomes reveals common themes in T3SS mediated pathogenesis.	BMC Research Notes	2013
164	Ranjit Singh Mahla Madhawa C Reddy D. Vijaya Raghava Prasad Himanshu Kumar	Sweeten PAMPs: Role of Sugar Complexed PAMPs in Innate Immunity and Vaccine Biology	Frontiers in Immunology	2013
165	Sushil Kumar Harshad Ingle DVR Prasad Himanshu Kumar	Recognition of Bacterial Infection by Innate Immune Sensors. Critical Reviews in Microbiology	Critical Reviews in Microbiology	2013
166	Himanshu Kumar Adrian Bot	Innate immune recognition mechanism and Translational Opportunities, an Editorial for special issue	International Reviews in Immunology	2013
167	M Baranowski H Y Yu T Ziegelhoffer J Kominek Chandan Sahi J Marszalek E A Craig	Sequential duplications of an ancient member of the DnaJ-family expanded the functional chaperone network in the eukaryotic cytosol.	Mol Biol Evol	2013
168	G L Ciesielski M Plotka M Manicki B A Schilke R Dutkiewicz Chandan Sahi J Marszalek E A Craig	Nucleoid localization of Hsp40 Mdj1 is important for its function in maintenance of mitochondrial DNA.	Biochim Biophys Acta	2013
169	Radhakrishnan Mahalakshmi Deepti Chaturvedi Svetlana Rajkumar Maurya	Modulating lipid dynamics and membrane fluidity to drive rapid folding of a transmembrane barrel	Scientific Reports	2013
170	Radhakrishnan Mahalakshmi Svetlana Rajkumar Maurya	Modulation of human mitochondrial voltage-dependent anion channel 2 (hVDAC-2) structural stability by cysteine-assisted barrel-lipid interactions.	Journal of Biological Chemistry	2013
171	Radhakrishnan Mahalakshmi SR Raghothama Kamlesh Madhusudan Makwana	Stabilizing effect of electrostatic vs aromatic interactions in diproline nucleated peptide beta-hairpins.	Phys. Chem. Chem. Phys.	2013
172	Radhakrishnan Mahalakshmi Muralikrishna Lella	Pro-Gly mediated conformational switch of Mycobacteriophage D29 holin transmembrane domain I is lipid concentration driven.	Chemical Communications	2013
173	Radhakrishnan Mahalakshmi Deepti Chaturvedi	Methionine Mutations of Outer Membrane Protein X Influence Structural Stability and beta-Barrel Unfolding.	PLoS One	2013
174	Papita Mandal Gajendra Kumar Azad Raghuvir Singh Tomar	Identification of a novel histone H3 specific protease activity in nuclei of chicken liver	Biophysical and Biochemical Research Communication	2012
175	Gajendra Kumar Azad Shah Jaimin Balkrishna Narayanan Sathish Sangit Kumar Raghuvir Singh Tomar	Multifunctional Ebselen drug functions through the activation of DNA damage response and alterations in nuclear proteins	Biochemical Pharmacology	2012
176	Vineet K. Sharma Naveen Kumar Tulika Prakash Todd D. Taylor	Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin	PLoS One	2012
177	Pritam Khan AR Barik EM Vinod KS Sangunni Himanshu Jain KV Adarsh	Coexistence of fast photodarkening and slow photobleaching in Ge 19 As 21 Se 60 thin films	Optics Express	2012
178	Deepti Chaturvedi Radhakrishnan Mahalakshmi Ankit Gupta	Modified CNBr cleavage protocol for efficient separation of Met-Ser containing OmpX-Om14 membrane protein fusion	Intl. Rev. Biophys. Chem.	2012
179	Maria Giovanna Rossetto Erica Zanarella Genny Orso Michele Scorzeto Aram Megighian Vimlesh Kumar Antonio V Delgado-Escueta Andrea Daga	Defhc1.1, a homologue of the juvenile myoclonic gene EFHC1, modulates architecture and basal activity of the neuromuscular junction in Drosophila	Human Molecular Genetics	2011
180	Hidehiro Toh Vineet K. Sharma Kenshiro Oshima Shinji Kondo Masahira Hattori F. Bruce Ward Andrew Free Todd D. Taylor	Complete Genome Sequences of Arcobacter butzleri ED-1 and Arcobacter sp. Strain L, Both Isolated from a Microbial Fuel Cell	Journal of Bacteriology	2011
181	Tulika Prakash Kenshiro Oshima Hidetoshi Morita Shinji Fukuda Akemi Imaoka Naveen Kumar Vineet K. Sharma Seok-Won Kim Mahoko Takahashi Naruya Saitou Todd D. Taylor Hiroshi Ohno Yoshinori Umesaki Masahira Hattori	Complete Genome Sequences of Rat and Mouse Segmented Filamentous Bacteria, a Potent Inducer of Th17 Cell Differentiation	Cell Host and Microbe	2011
182	Kelly-Anne F Twist Elizabeth A Campbell Padraig Deighan Sergei Nechaev Vikas Jain E Peter Geiduschek Ann Hochschild Seth A Darst	Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the β-subunit flap domain of Escherichia coli RNA polymerase	Proceedings of the National Academy of Sciences	2011
183	Himanshu Kumar Taro Kawai Shizuo Akira	Pathogen Recognition by the Innate Immune System	International Reviews in Immunology	2011